Page WeeklyReport

Week 1 (24.05.2010 - 30.05.2010)

• Write expose for Master Thesis
• Structuring Master Thesis
  • Brief task structure
  • Create requirement list
  • Create Work Breakdown Structure (WBS)
• Set up wiki sites

break

Week 2 (06.09.2010 - 12.09.2010)

• Implemented interface to generate Journal out of an alignment
• Implemented interface to adapt mismatches within an alignment to insertions/deletions

Week 3 (13.09.2010 - 29.09.2010)

• Implemented basic string set structure for journal strings
  • appandValue method, that searches for identical reference sequences within the set and applies new journal to corresponding group

Week 4 (20.09.2010 - 26.09.2010)

• Implemented group object to manage groups in a string - used for string set of journals
• Implemented iterator for groups in a string

Week 5 (27.09.2010 - 03.10.2010)

• Implemented insert method for string set of journals

Week 6 (04.10.2010 - 10.10.2010)

• Implemented several interfaces

Baby-pause

• Became a dad

Week 7 (03.01.2011 - 09.01.2011)

• Implemented join interface for string set

Week 8 (10.01.2011 - 16.01.2011)

• Refactoring of prototypic join interfaces

Week 9 (17.01.2011 - 23.01.2011)

• Developing synchronization algorithm for two journal trees

Week 10 (24.01.2011 - 30.01.2011)

• Implemented synchronization algorithm for two journal trees
• Preparing report of current status

Week 11 (31.01.2011 - 06.02.2011)

• Report
• Refactgoring of synchronization algorithm
• Extended string set interface for certain group access

Week 12 (07.01.2011 - 13.02.2011)

• Extended Score class with specialization ExtendedScore, which supports double affine gap costs
• Adapted Gotoh-Algorithm for double affine gap costs
• Implemented merge interface for groups

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