Summarizes the weekly progress of the DFG project.
Jul 2011
- 01. July 2011: Welcome AG ABI
week 04. - 0.8
- We: M.Sc. talk
- organizational stuff
- familiarization with SeqAn Project
- overview of the project wiki
- overview of important websites
- novel SeqAn structure
- code guidelines
week 11. - 15.
- notebook defect, rent AG ABI MacBook Air
- familiarization with Mac OS
- code refactoring: StringSet for journaled sequences
- Fr: graduation ceremony
week 18. - 22.
- create project plan
- literature research
- Suffix Array construction algorithm
- Kasai algorithm
- Enhanced Suffix Arrays
- code Refactoring
- wiki maintanance
week 25. - 29.
- create project plan
- literature research
- Suffix Array construction algorithm
- creation of childtab
- find suffixes affected by a modification
- Th: iMac has been delivered
- went home earlier due to illness in family
- Fr: set up iMac
Aug 2011
week 01.08. - 05.08
- sign commencement of work for:
David, Manuel, Chris, Björn, Jochen, Sabrina
- create project plan
- literature research
- Suffix Array construction algorithm
- dynamic update of SA: Salinger et al.
- find suffixes affected by a modification
- code Refactoring
week 08.08. - 12.08.
- write eclipse tutorial
- create project plan
- literature research
- dynamic update of SA: Salinger et al.
- develop concept of delta indices
- code refactoring Journal-Set
week 15.08. - 19.08.
- create project plan
- literature research
- dynamic update of SA: Salinger et al.
- concept of delta indicies
- code refactoring Journal-Set
week 22.08. - 26.08.
- code refactoring Journal-Set
- tutorial to set up eclipse for seqan
week 29.08. - 02.09.
- code refactoring Journal-Set
Sep 2011
week 05.09. - 09.09.4
- code refactoring Journal-Set
- Knime: test plugin
- Workshop