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ThesisMCRazerMcSpeedDifferentNumberOfCores
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ThesisMCRazerMcSpeedDifferentNumberOfCores
09 Aug 2023 - 17:03
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UnknownUser
Auf Tanne
Reference: chr22.fa
Reads: SRR006387.fastq_1.00000 (100,000)
cores
real time
cpu time filtering
cpu time verifying
1
~ 125 sec
~ 106.4 sec
~ 8.3 sec
2
~ 97 sec
~ 167.9 sec
~ 8.5 sec
3
~ 108 sec
~ 266.1 sec
~ 9.9 sec
4
~ 115 sec
~ 403.3 sec
~ 11.3 sec
too many cores are counter productive
how to find out how many are good?
maybe use only three cores:
two for filtering
one for verification
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