Genomics (WiSe 2014)
Welcome to the Wiki of the MSc lecture
Genomics (CUB848/CUB849).
News
SWS: 2+2
ECTS:
Lecturer:
Peter Robinson, Charité Berlin
Exercises: (...)
Language: English
Requirements for Aktive Teilnahme
(...)
Times and Dates
Event |
Day |
Time |
Address |
Room |
Lecture (CUB848) |
Tue |
14-16 |
Arnimallee 6 |
SR 007/008 |
Exercise (CUB849) |
Thu |
08-10 |
Takustr. 9 |
SR 006 |
Schedule (alt / 2013)
Date |
Lecture |
Lecturer |
15.10.-26.11. |
Algorithms for approximate string search in NGS data and applications |
|
15.10.2013 |
Lecture 1: NGS technologies |
Robinson |
22.10.2013 |
Lecture 2: Read mapping considerations |
Reinert |
29.10.2013 |
Lecture 3: Myers bitvector edit distance algorithm |
Weese |
05.11.2013 |
Lecture 4: Hierarchical pigeonhole filter |
Weese |
12.11.2013 |
Lecture 5: Variant Calling and Annotation I |
Robinson |
19.11.2013 |
Lecture 6: Index based methods and the BWT |
Reinert |
26.11.2013 |
Lecture 7: Variant Calling and Annotation II |
Robinson |
28.11.2013 |
Review 1 (during exercises) |
|
03.12.-14.01. |
Computing genetic variations |
|
03.12.2013 |
Lecture 8: Problems in metagenome analysis |
Reinert/Singer |
10.12.2013 |
Lecture 9: Variant Calling and Annotation II |
Robinson |
17.12.2013 |
Lecture 10: Structural Variants I |
Robinson |
07.01.2014 |
Lecture 11: Structural Variants II |
Robinson |
14.01.2014 |
Review 2 (during exercises) |
|
.??.??-??.??. |
Quantitative NGS analysis |
|
14.01.2014 |
Lecture 12: RNA-seq I |
Robinson |
21.01.2014 |
Lecture 13: RNA-seq II |
Robinson |
28.01.2014 |
Lecture 14: ChIP-seq I |
Robinson |
04.02.2014 |
Lecture 15: ChIP-Seq II |
Robinson |
11.02.2014 |
Exam |
Exercises (alt / WiSe 2013)
Exam results
Reviews
You need to reach 50% of all points of the two reviews.
Review 1
Review 2