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Page ThesisMCRazerMcSpeedDifferentNumberOfCores

  • Auf Tanne
  • Reference: chr22.fa
  • Reads: SRR006387.fastq_1.00000 (100,000)

cores real time cpu time filtering cpu time verifying
1 ~ 125 sec ~ 106.4 sec ~ 8.3 sec
2 ~ 97 sec ~ 167.9 sec ~ 8.5 sec
3 ~ 108 sec ~ 266.1 sec ~ 9.9 sec
4 ~ 115 sec ~ 403.3 sec ~ 11.3 sec

  • too many cores are counter productive
  • how to find out how many are good?
  • maybe use only three cores:
    • two for filtering
    • one for verification
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Topic revision: r1 - 22 Mar 2010, mriese - This page was cached on 10 Mar 2025 - 09:22.

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