Page Genomics12

Welcome to the Wiki of the MSc lecture Genomics.

News

The 2nd exam will be on May 13th (Monday), 10-12h, room 049 / Takustr. 9

Bonus Review: There will be a third "bonus" review on Thursday (31.1.2013) in which students can get a maximum of 30 additional points. The test will cover the two RNAseq lectures as well as the Chip-seq lecture of Tuesday (29.1.2013). The review will begin at 8:30 AM and go for 45min. The answers to the questions will be discussed from 9:15-9:45.

The last exercise scheduled for this year for the 20th of December, will not take place. The current plan is hold a revision course before the exam as a replacement.

Room has changed for lecture on Tuesdays, 14-16h: Takustr. 9 / SR 005

The second and following Exercises start at 8:30.

Exercises start Thursday 25th at 8:15 am.

Exam results

Exam 1

xxx9094	88	1.3
xxx938	64	3.0
xxx4884	90	1.3
xxx5132	89	1.3
xxx8987	98	1.0
xxx480	91	1.3
xxx671	95	1.0
xxx1347	90	1.3
xxx6104	91	1.3
xxx2290	96	1.0
xxx7304	83	1.7
xxx8601	91	1.3
xxx7797	31	5.0
xxx964	76	2.3
xxx5525	63	3.0
xxx2657	87	1.3
xxx2117	81	2.0
xxx1739	47	4.0
xxx1308	70	2.7
xxx2596	72	2.3
xxx9991	13	5.0
xxx5975	82	1.7
xxx4257	98	1.0
xxx2305	86	1.7
xxx5583	72	2.3
xxx9870	79	2.0
xxx3346	86	1.7
xxx6546	43	5.0
xxx9252	76	2.3

Times and rooms

Rooms and timings

Event	Day	Time	Address	Room
Lecture	Tue	14-16	Takustraße 9	005
Exercise	Thu	08-10	Takustraße 9	006

Schedule

Date	Lecture	Lecturer
16.10.-13.11.	Algorithms for approximate string search in NGS data
16.10.2012	Lecture 1: NGS technologies	Robinson
23.10.2012	Lecture 2: Read mapping considerations	Reinert
30.10.2012	Lecture 3: Myers bitvector edit distance algorithm	Reinert
06.11.2012	Lecture 4: Hierarchical pigeonhole filter	Reinert
13.11.2012	Lecture 5: Index based methods and the BWT	Reinert
20.11.-27.11.	Methods for analysis of metagenomes	Reinert
20.11.2012	Lecture 6: Problems in metagenome analysis I	Reinert
22.11.2012	Review 1 (during exercises)
27.11.2012	Lecture 7: Problems in metagenome analysis II	Reinert
04.12.-15.01.	Computing genetic variations
04.12.2012	Lecture 8: Variant Calling and Annotation I	Robinson
11.12.2012	Lecture 9: Variant Calling and Annotation II	Robinson
18.12.2012	Lecture 10: Structural Variants I	Robinson
08.01.2013	Lecture 11: Structural Variants II	Robinson
15.01.2013	Review 2 (during exercises)
.??.??-??.??.	Quantitative NGS analysis
15.01.2013	Lecture 12: RNA-seq I	Robinson
22.01.2013	Lecture 13: RNA-seq II	Robinson
29.01.2013	Lecture 14: ChIP-seq I	Robinson
05.02.2013	Lecture 15: ChIP-Seq II	Robinson
12.02.2013	Exam

Exercises

Discussed at	Excerise
25.10.2012	Exercise 1
01.11.2012	Exercise 2
08.11.2012	Exercise 3
15.11.2012	Exercise 4
29.11.2012	Exercise 5 / Exercise 5 with solution
06.12.2012	Exercise 6
13.12.2012	Exercise 7
10.01.2013?	Exercise 8

Requirements for Aktive Teilnahme

You need to reach 50% of all points of the two reviews.

Repetitorium on 7 Feb. 2013

• repetitoriumGenomics.pdf: repetitoriumGenomics.pdf