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AdvancedAlgorithms11
Page AdvancedAlgorithms11 Welcome to the Wiki of the Lecture Advanced Algorithms in Bioinformatics (P4). News * 28.09. (Weese): The second examination (Nachkl...
r23 - 01 May 2013 - 18:11 by weese
AdvancedAlgorithms11_Indices
Index Data Structures Lectures Date Lecture* *Materials (Enhanced) Suffix Array 09.05.2011 Suffix Array Construction and Searching script 07...
r21 - 11 Jul 2011 - 15:23 by DavidWeese
AdvancedAlgorithms12
Page AdvancedAlgorithms12 Welcome to the Wiki of the Lecture Advanced Algorithms in Bioinformatics (P4). News * (18.1.13) The results of the second exam can...
BiBWTApps
MSc Thesis The birectional BWT and its applications Topic TODO Journal * 2014 09 15: I read up on templates, forked the official seqan repository, set Ecli...
r18 - 15 Nov 2014 - 17:00 by cpockrandt
BscSeqAn010Seeds
Implementing 01*0 seed search strategy using the bidirectional FM index in SeqAn Background Approximate string matching is an important subtask in many bioinform...
r3 - 25 Nov 2016 - 15:08 by cpockrandt
BscSeqAnOpenMSPeptideIndexer
Peptide Indexer using SeqAn and OpenMS Background In Proteomics one subtask for Peptide ID is to search peptide sequences in protein databases. This thesis shall...
FMIndexThesis
FM Index in Seqan
NEW - 30 Apr 2013 - 19:28 by jsinger
ForumSpace
Page ForumSpace Thsi page will be the discussion forum. Lecture 1 REINERT (30.4): Hier könnte eine ausgearbeitetere Version der Vorlesungsabfolge stehen. Oder ...
r34 - 02 Jun 2010 - 17:45 by DavidWeese
OldContent
Online String Searching and Filtering 11.04. 06.05. Index Data Structures 09.05. 30.05. Review 1 11.05. Genome Comparison and RNA Analysis 03.0...
PSMB_Seqan_2014_mapper
PSMB_Seqan_2014_mapper Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigent...
PSMB_Seqan_2016_p3
PSMB_Seqan_2016_p3 Hintergrund Der erste Schritt ein einer Pipeline zur Analyse von Genomvarianten ist das Read Mapping. Dabei soll für jeden NGS Read eigentlich...
r2 - 04 May 2016 - 13:52 by cpockrandt
ParallelSuffixArray
Parallel Suffix Array Construction Area Substring Indices Topic Das Suffix Array speichert die Anfänge aller Suffixe eines (oder mehrerer) Texte in lexikographi...
NEW - 31 Oct 2012 - 09:58 by DavidWeese
RnaSeqP4
Page RnaSeqP4 This is the project page of the RNA Seq group. Students Mail an alle Gruppenmitglieder: AA2010SS RNASeq bei lists.spline.de Name email Cori...
r51 - 22 Jul 2010 - 16:30 by cblasse
Sequence_analysi_2013
Sequence Analysis SS 2013 Welcome to the Wiki of the Lecture Sequence Analysis. This module consists of 2 hours lecture, 2 hours exercise and 2 hours seminar. The...
Sequence_analysis_2013
THIS IS STILL OLD Times and rooms Rooms and timings Event Day Time Address Room Lecture Tue 10 12 Takustr. 9 005 Lecture Thu ...
Sequence_analysis_2014
Sequence Analysis, SoSe 2014 (LV Nr. 19716, 19716a, 19716b) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lecture, 2 hours exercis...
Sequence_analysis_2015
Sequence Analysis, SoSe 2015 (LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. This module consists of 2 hours lectu...
Sequence_analysis_2016
Sequence Analysis, SoSe 2016 *(LV Nr. 19401601 (V), 19401602 (Ü), 19401611 (S)) Welcome to the Wiki of Sequence Analysis. Dear Students. We will use for the lec...
ThesesHome
Theses Page OUTDATED! Go to: https://kvv.imp.fu berlin.de/x/8RK4cp Available topics * If you are interested in doing your thesis in algorithmic bioinformatic...
ThesisSeqAnBlast
BLAST Implementation in SeqAn Es soll ein BLASTX (Nukleotidsequenz 6 fach translatieren und gegen Proteindatenbank abgleichen) 'from scratch' für die SeqAn Bib...
r12 - 15 Sep 2012 - 10:31 by fsiemer
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Number of topics: 21
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